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computational Biology |
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Data & Spaces ASAP ASAP2 ASD ASG EASED FASTDB HOLLYWOOD MAASE PALSDB PROSPLICER SPLICEINFO SPLICENEST STACKDB Browsers UCSC Genome Browser Ensembl Alignments BLAT BLAT DDS/GAP2 EXALIN GeneSeqer GMAP MGAlign Sim4 Spa Spidey Signals & Scores 5'/3'ss scores (CSHL) 5'/3'ss scores (Tel Aviv) Branch site score (Tel Aviv) 5'/3'ss scores (by A.D.Li) MaxEnt 5'ss score (MIT) MaxEnt 3'ss score (MIT) Motifs ESE Finder ESR elements FAS-ESS elements PSEX elements RESCUE-ESE elements Prediction ACEScan (Article) Non-EST-based method for exon skipping (Article) UNCOVER RASE μArrays Combimatrix Exiqon GeneChip exon array Nimblegen Illumina Exiqon Technology 454 Life Sciences CLIP tag annotation |
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Recent publications E.V.Makeyev, et al. [Article] The MicroRNA miR-124 Promotes Neuronal Differentiation by Triggering Brain-Specific Alternative Pre-mRNA Splicing J.Ule, et al. (2006) [Article] An RNA map predicting Nova-dependent splicing regulation Reviews & Tutorials D.Holste and U.Ohler (2008) [Article] Strategies for identifying RNA splicing regulatory motifs and predicting alternative splicing events Y.Xing and C.Lee (2006) [Article] Alternative splicing and RNA selection pressure: evolutionary consequences for eukaryotic genomes M.Zavolan and E.v.Nimwegen (2006) [Article] The types and prevalence of alternative splice forms D.Holste and U.Ohler (2006) [Tutorial] An integrated ISMB tutorial on the biology of current computational approaches for posttranscriptional gene regulation, with a focus on RNA splicing A.J.Matlin, F.Clark, and C.W.J.Smith (2005) [Article] Understanding alternative splicing: toward a cellular code C.Lee and Q.Wang (2005) [Article] Bioinformatics analysis of alternative splicing D.L.Black (2003) [Article] Mechanisms of alternative pre-messenger RNA splicing D.L.Black and P.J.Grabowski (2003) [Article] Alternative pre-mRNA splicing and neuronal function S.Boue, I.Letinic, and P.Bork (2003) [Article] Alternative splicing and evolution A.J.Lopez (1998) [Article] Alternative splicing of pre-mRNA: developmental consequences and mechanisms of regulation People & Places AS-SIG [ 2008 | 2007-2004 ] BCBGC [ 2008 ] BIBE [ 2008 | 2007-2001 ] EURASNET [ 2008 ] GRC Nucleic Acids [ 2008 | 2007-1962 ] GRC Bioinformatics [ | 2007 | 2003 | 2001 ] ISMB [ 2008 | 2007-1993 ] PSB [ 2008 | 2007-1995 ] RNA Society Annual Meeting[ 2008 | 2007-1996] More on conferences [1] [2] [3] Labs Ares/UCSC Ast/Tel Aviv Barta/Vienna Black/HHMI Blencowe/Toronto Burge/MIT Cacares/MRC Chasin/Columbia Darnell/Rockefeller Fairbrother/Brown Gaasterland/Scripps Societies & Networks RNA Society / International Society for Computational Biology / EURASNET / IEEE Computational Intelligence in Bioinformatics and Computational Biology |
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